Abstracts of our representative articles.2006Itai Chipinda and Reuben Simoyi Formation and Stability of a Nitric Oxide Donor: S-Nitroso-N-acetylpenicillamine J. Phys. Chem. B, 110 (10), 5052 -5061, 2006 Abstract: The formation, reaction dynamics, and detailed kinetics and mechanism of the reaction between nitrous acid and N-acetylpenicillamine (NAP) to produce S-nitroso-N-acetylpenicillamine (SNAP) was studied in acidic medium. The nitrous acid was prepared in situ by the rapid reaction between sodium nitrite and hydrochloric acid. The reaction is first order in nitrite and NAP. It is also first order in acid in pH conditions at or slightly higher than the pKa of nitrous acid. In lower pH conditions, the catalytic effect of acid quickly saturates. Higher acid concentrations also induce a faster decomposition rate of the SNAP, thus precluding the quantitative formation of SNAP from HNO2 and NAP. Both HPLC and quadrupole time-of-flight mass spectrometry techniques proved that SNAP was the sole product produced. No nitrosation occurred on the secondary amine center in NAP, and only the thiol group reacted to form the nitrosothiol. Cu(I) ions were found to be effective SNAP-decomposition catalysts. Cu(II) ions had no effect on the stability of SNAP. Ambient oxygen in reaction solutions was found to have no effect on initial rates of formation of SNAP, products obtained, and stability of SNAP. The formation of SNAP occurs through two distinct pathways. One involves the direct reaction of NAP and HNO2 to form SNAP and eliminate water, and the second pathway involved the initial formation of the nitrosyl cation, NO+, which then nitrosates the thiol. The bimolecular rate constant for the reaction of NAP and HNO2 was derived as 2.69 M-1 s-1, while that of direct nitrosation by the nitrosyl cation was 3.00 × 104 M-1 s-1. A simple reaction network made up of four reactions was found to be sufficient in simulating the formation kinetics and acid-induced decomposition of SNAP. Olufunke Olagunju, Paul D. Siegel, Rotimi Olojo, and Reuben H. Simoyi Oxyhalogen-Sulfur Chemistry: Kinetics and Mechanism of Oxidation of N-Acetylthiourea by Chlorite and Chlorine Dioxide J. Phys. Chem. A, 110 (7), 2396 -2410, 2006 Abstract: The
oxidation reactions of N-acetylthiourea (ACTU) by chlorite and
chlorine dioxide were studied in slightly acidic media. The ACTU-ClO2-
reaction has a complex dependence on acid with acid catalysis in pH > 2
followed by acid retardation in higher acid conditions. In excess chlorite
conditions the reaction is characterized by a very short induction period
followed by a sudden and rapid formation of chlorine dioxide and sulfate. In
some ratios of oxidant to reductant mixtures, oligo-oscillatory formation of
chlorine dioxide is observed. The stoichiometry of the reaction is 2:1, with
a complete desulfurization of the ACTU thiocarbamide to produce the
corresponding urea product: 2ClO2- + CH3CONH(NH2)C=S
+ H2O 2005Adenike Otoikhian and Reuben H. Simoyi Oxidation of a Dimethylthiourea Metabolite by Iodine and Acidified Iodate: N,N'-Dimethylaminoiminomethanesulfinic Acid Chem. Res. Toxicol., 18 (7), 1167 -1177, 2005 Abstract: The two
major metabolites after S-oxygenation of dimethylthiourea (dimethylaminoiminomethane
sulfinic acid, DMAIMSA, and dimethylaminoiminomethane sulfonic acid,
DMAIMSOA) were synthesized and tested for their reactivities in the presence
of mild oxidants, aqueous iodine and acidic iodate. The stoichiometry of the
iodate-DMAIMSA reaction is 2IO3- + 3NHCH3(=NCH3)CSO2H
+ 3H2O Tabitha R. Chigwada, Edward Chikwana, and Reuben H. Simoyi S-Oxygenation of Thiocarbamides I: Oxidation of Phenylthiourea by Chlorite in Acidic Media J. Phys. Chem. A, 109 (6), 1081 -1093, 2005 Abstract: The
oxidation of 1-phenyl-2-thiourea (PTU) by chlorite was studied in aqueous
acidic media. The reaction is extremely complex with reaction dynamics
strongly influenced by the pH of reaction medium. In excess chlorite
concentrations the reaction stoichiometry involves the complete
desulfurization of PTU to yield a urea residue and sulfate: 2ClO2-
+ PhN(H)CSNH2 + H2O 2004Rotimi Olojo and Reuben H. Simoyi Oxyhalogen-Sulfur Chemistry: Kinetics and Mechanism of the Oxidation of Thionicotinamide by Peracetic Acid J. Phys. Chem. A, 108 (6), 1018 -1023, 2004 Abstract: The kinetics and mechanism of oxidation of an important
xenobiotic, thionicotinamide (TNA), using peracetic acid in slightly acidic
media were studied by spectrophotometric techniques. The reaction is
characterized by a very rapid initial oxidation of the sulfur atom of the
thioamide group to the S-oxide, followed by a much slower
decomposition of the S-oxide to form additional oxidation products,
mainly the thionicotinamide sulfinic acid. In excess thionicotinamide, the
stoichiometry of the reaction was determined to be CH3CO3H
+ (C5H5N)C(=S)NH2 Edward Chikwana and Reuben H. Simoyi Oxyhalogen-Sulfur Chemistry: Kinetics and Mechanism of Oxidation of Amidinothiourea by Acidified Iodate J. Phys. Chem. A, 108 (6), 1024 -1032, 2004 Abstract: The
oxidation of guanylthiourea, GTU, by mildly acidic iodate and molecular
iodine has been studied. Its reaction with iodate shows an oligooscillatory
formation and consumption of iodine in batch conditions. The major oxidation
product is a ring-cyclized product of guanylthiourea,
3,5-diamino-1,2,4-thiadiazole (GTU-C), in which the thioureado moiety is
oxidized to the unstable sulfenic acid that instantly attacks the distal
amino group, eliminating water and forming the five-membered thiadiazole
group. In excess GTU conditions, the stoichiometry of the reaction was 1:3
without any further oxidation past a 2-electron transfer, IO3-
+ 3H2NC(=NH)NH(C=S)NH2 2003Nicholas Madhiri, Rotimi Olojo and Reuben H. Simoyi Oxyhalogen–sulfur chemistry: kinetics and mechanism of oxidation of formamidine disulfide by acidic bromate Physical Chemistry Chemical Physics, 2003, 5, 4149 - 4156 Abstract: The
kinetics and mechanism of the oxidation of formamidine disulfide, FDS, a
dimer and major metabolite of thiourea, by bromate have been studied in
acidic media. In excess bromate conditions the reaction displays an
induction period before formation of bromine. The stoichiometry of the
reaction is: 7BrO3– James Darkwa, Rotimi Olojo, Olufunke Olagunju, Adenike Otoikhian, and Reuben Simoyi Oxyhalogen-Sulfur Chemistry: Oxidation of N-Acetylcysteine by Chlorite and Acidic Bromate J. Phys. Chem. A, 107 (46), 9834 -9845, 2003 Abstract: The
kinetics and mechanism of the oxidation of an important organosulfur
antioxidant, N-acetylcysteine, by chlorite and acidified bromate have
been studied. In both cases, the final product is N-acetylcysteinesulfonic
acid without cleavage of the C-S bond to form sulfate. There was also no
evidence for the formation of N-chloramine nor N-bromamine as
has been observed with other aminothiols such as taurine. N-Acetylcysteine
was oxidized via a stepwise S-oxygenation process in which consecutively a
sulfenic and a sulfinic acid were formed before formation of the cysteic
acid product. The stoichiometry of the chlorite-N-acetylcysteine was
experimentally deduced to be 3ClO2- + 2(CH3CO)HNCH(CO2H)CH2SH 2002Bice S. Martincigh and Reuben Simoyi Pattern Formation Fueled by Dissipation of Chemical Energy: Conclusive Evidence for the Formation of a Convective Torus J. Phys. Chem. A, 106 (3), 482 -489, 2002 Abstract: An exothermic, autocatalytic chemical reaction can produce a lateral instability which can result in a rapidly moving wave of chemical reactivity. The propagating wave is strongly influenced by thermocapillary effects. At high Marangoni numbers the traveling wave has shown irregular patterning and spatiotemporal irregularity that is aligned in the direction of wave propagation. At lower Marangoni numbers effective coupling occurs between thermocapilary and thermogravitational Rayleigh-Benard type effects. This coupling has produced powerful thermal plumes just behind the leading wave front as well as a series of concentric patterning that represent "transient" Turing patterns. Observations of these effects had led to the conjecture that the wave forms a series of convective tori as it propagates. In this paper recent experimental data are produced that clearly show the dynamic formation of convective tori at the wave front. 2001Serge A. Svarovsky and Reuben H. Simoyi A Possible Mechanism for Thiourea-Based Toxicities: Kinetics and Mechanism of Decomposition of Thiourea Dioxides in Alkaline Solutions J. Phys. Chem. B, 105 (50), 12634 -12643, 2001 Abstract: The decomposition kinetics of a series of thiourea dioxides has been studied in alkaline media. In aerobic conditions the decomposition is characterized by an induction period, which is followed by the formation of dithionite, S2O42-. The rates of consumption of the thiourea dioxide and the formation of dithionite follow zero-order kinetics. No dithionite is formed in anaerobic conditions, although the thiourea dioxides can still rapidly decompose in the absence of oxygen to give sulfite and a urea as the decomposition products. No dithionite is formed until all the dioxygen in solution has been consumed, and hence the induction time is determined by the initial oxygen concentration in solution. A comprehensive mechanism that can adequately explain the decomposition is proposed in which the initial step is the cleavage of the C-S bond to give a urea residue and the sulfoxylate ion, SO22-. The sulfoxylate ion is next rapidly oxidized by oxygen to give the anion radical, SO2-, which is the precursor to the formation of dithionite via a rapid equilibrium. In aerobic environments the sufoxylate ion can produce the highly tissue-damaging series of reactive oxygen species superoxide, peroxide, and hydroxyl radical. These species could be responsible for the inherent toxicities associated with thioureas. 1998Sergei Makarov, Claudius Mundoma, John H. Penn, Serge A. Svarovsky, and Reuben H. Simoyi New and Surprising Experimental Results from the Oxidation of Sulfinic and Sulfonic Acids J. Phys. Chem. A, 102 (34), 6786 -6792, 1998 Abstract: Thiourea,
(H2N)2C=S, aminoiminomethanesulfinic acid, H2N(HN=)CSO2H
(AIMSA), and aminoiminomethanesulfonic acid, H2N(HN=)CSO3H
(AIMSOA) are all oxidized by mild oxidizing agents to a sulfate and an
organic residue. AIMSA and AIMSOA are the postulated intermediates in the
oxidation pathway of thiourea to sulfate. The oxidation of AIMSOA is
accompanied by a cleavage of the C-S bond to form sulfate. Surprisingly,
freshly prepared solutions of AIMSOA are oxidized by the common oxidants (oxyhalogens
and halogens) at rates that are much slower than oxidation rates of AIMSA by
the same oxidants. These results seem to suggest that AIMSOA may be
structurally different from AIMSA and that the decomposition of AIMSOA to
HSO3- is the prerequisite to its oxidation. The
oxidation pathway of AIMSA to SO42- also proceeds
through the formation of HSO3- and not predominantly
through AIMSOA. Cordelia Chinake, Oluwarotimi Olojo and Reuben H. Simoyi Oxidation of Formaldehyde by Chlorite in Basic and Slightly Acidic Media J. Phys. Chem. A, 102 (3), 606 -611, 1998 Abstract: The reaction of chlorite and formaldehyde was studied
in basic and slightly acidic media. Though the expected product was
CO2, the oxidation of HCHO, however, gave nearly quantitative
formation of ClO2, the oxidation product of ClO2-.
In excess HCHO the stoichiometry of the reaction was deduced as 3ClO2-
+ HCHO + 2H+ 1997Cordelia R. Chinake and Reuben H. Simoyi Experimental studies of spatial patterns produced by diffusion-convection - reaction systems J. Chem. Soc., Faraday Trans., 1997, 93(7), 1345 Abstract: The reactions between chlorite ions and a series of sulfur
compounds are bistable and autocatalytic in hypochlorous acid. Unstirred solution mixtures
of chlorite ions and thiourea, for example, can generate a travelling wave of chemical
reactivity at the surface fram a point of initial perturbation These reactions are highly
exothermic and exhibit a sharp temperature jump at the wave front (dT = 3 - 5 ºC). In
stoichiometric excess of chlorite ions and in unstirred solutions the travelling wave is
followed by spatial patterns in the bulk of the solution. The spatial patterns, which show
areas of varying acid concentrations, can be sustained for up to 15 min. Formation of the
travelling wave is due to thermocapillary effects. The transition to patterns is fuelled
by the coupling of buoyancy forces with thermocapillary convection. Cordelia R. Chinake and Reuben H. Simoyi Oxyhalogen - Sulfur Chemistry: Oxidation of Taurine by Chlorite in Acidic Medium J. Phys. Chem., B 1997, 101, 1207 Abstract: The reaction between chlorite and the aminosulfonic acid,
taurine, has been studied in neutral to acidic pH. 1996James Darkwa, Claudius Mundoma and Reuben H. Simoyi Oxyhalogen-sulfur chemistry: Non-linear oxidation of 2-aminoethanethiolsulfuric acid (AETSA) by bromate in acidic medium J. Chem. Soc., Faraday Trans., 1996, 92(22), 4407 Abstract: The reaction between bromate and 2-aminoethanethiolsulfuric acid, H2NCH2CH2SSO3H (AETSA), has been studied in high acid environments. The stoichiometry in excess AETSA is BrO3- + H2NCH2CH2SSO3H + H2O à H2NCH2CH2SSO3H + SO42- + 2H+ + Br-. In excess BrO3 the stoichiometry is: 7BrO3- + H2NCH2CH2SSO3H à 5Br(H)NCH2CH2SO3H + 5SO42- + Br2 + 3H+ + H2O. The reaction displays clock reaction characteristics in which there is initial quiescence followed by a sudden and rapid formation of Br2(aq). The oxidation proceeds by successive addition of oxygen on the inner sulfur atom followed by cleavage of the S S bond to form taurine and SO42- . The Br2(aq) and the HOBr in solution oxidize the taurine to form a mixture of monobromotaurine and dibromotaurine. Computer simulations of a proposed 13-step reaction scheme produced a reasonable fit to the experimental data. Cordelia R. Chinake and Reuben H. Simoyi Kinetics and Mechanisms of the complex bromate-iodine reaction Journal of Physical Chemistry, 1996, 100 Abstract: The mechanism of the reaction between bromate and iodine in acidic medium (HClO4), in a closed system, has been investigated by both experimental and computer simulation techniques. The stoichiometry of the reaction is 2BrO3- + I2 ® 2IO3- + Br2. The reaction is preceded by an induction period whose length is inversely proportional to the concentration of bromate and the square of the acid concentration. The induction period increases upon the addition of iodide and bromide ions; with the effect of bromide ions being less marked. These ions consume HOI and HOBr molecules which are precursors to the oxidation of iodine. At the end of the induction period iodine is suddenly depleted while simultaneously a transient interhalogen iodine bromide, IBr, is formed and consumed rapidly. As soon as the IBr concentration reaches its maximum value, i.e., [IBr]max = 2[I2]o, it is rapidly consumed at an exponential rate given by -d[IBr]/dt = k1[IBr]. When all the IBr has been depleted molecular bromine is formed at the rate d[Br2]/dt = k2[H+][BrO3-][I2]. Values of k1 and k2 were evaluated as 0.47 ± 0.10 s-1 and 0.26 ± 0.02 M-2 s-1 respectively. A 17-step mechanism which encompasses the mechanisms of the bromate-iodine and bromate-iodide reactions gives good agreement between experimental data and computer simulation. An extensive set of experimental data is presented that supports a molecular mechanism over a radical-dominated one. 1995Bice S. Martincigh, Marcus J. B. Hauser, and Reuben H. SimoyiFormation of thermal plumes in an autocatalytic exothermic chemical reaction Physical Review E, v52(6), 1995 Abstract: The reaction of chlorite and thiourea is bistable and displays a lateral instability that generates a traveling wave of sulfate, acid, and chlorine dioxide. The wave was visualized by the addition of barium chloride, which gave a white precipitate of barium sulfate. The wave propagates with three distinct regions of varying precipitation intensities. One of the regions is made up of a complete convective roll that forms powerful thermal plumes which rise to the surface of the reactant solution. The plumes originate from a coupling of Marangoni convection with multicornponent convection. Cordelia R. Chinake and Reuben H. Simoyi Fingering Patterns and Other Interesting Dynamics in the Chemical Waves Generated by the Chlorite-Thiourea Reaction J. Chem. Soc. Faraday Trans, 1995, 91(11), 1635 Abstract: The reaction between chlorite and thiourea is excitable and autocatalytic in HOCl. It produces a chemical wave of ClO2 when ClO2- is in stoichiometric excess over thiourea. The chemical wave has been studied in glass tubes of varying diameters. The dynamics of the wave front propagation have been studied as a function of convection, which is known to induce density gradients. The C102-thiourea reaction is highly exothermic, and the chemical wave has a positive isothermal density change. In vertical tubes the effect of the exothermicity of the reaction opposes the effect of the isothermal density change, giving an asymmetric and unstable wave front in descending waves. Multicomponent convection and fingering patterns have been observed in descending waves. Ascending waves propagate without structure and are generally slower than descending waves. In starch solutions fingering patterns are observed which propagate downward at greater than 10 times the normal front velocity. These fingers turn into rapidly-rising plumes after they reach the bottom of the tube. Formation of rising plumes is due to the hot interior of the finger which is lighter than the unreacted solution, but when the reacted solution propagates upward into the cold unreacted region, the cooling effect makes the solution heavier, giving a symmetric "mushroom-shaped" plume. Bice S. Martincigh and Reuben H. Simoyi Convective instabilities induced by an exothermic autocatalytic chemical reaction Physical Review E, 1995, v52(2), 1606 Abstract: A bistable or excitable exothermic chemical reaction can produce a traveling front of chemical reactivity upon being triggered. The dynamics of the wave propagatian are greatly influenced by the amount of heat generated at the wave front, which in turn is a function of (nonlinear) reaction kinetics, enthalpy change, and extent of reaction. The chemical reaction investigated here has shown complex propagative patterns, including accelerating big waves, convective rolls, double-diffusive convection, and spatiotemporal patterns. A model devised to explain the patterns involves a laterally heated fluid layer in which the basic flow loses stability in the form of hydrothermal waves. Wave motion is preceded by a global circulation between the hot and cold regions, with the velocity being praportional to the lateral temperature gradient. In this highly exothermic reaction the spatiotemporal patterns can be explained by a stability analysis of the Bernard-Marangoni convectian with lateral heating. 1994Marcus J.B. Hauser, Reuben H. Simoyi Inhomogeneous precipitation patterns in a chemical wave. Effect of thermocapillary convection Chemical Physics Letters 227, (1994), 593 Abstract: Bice S. Martincigh, Cordelia R. Chinake & Reuben H. Simoyi Self-organization with traveling waves: A case for a convective torus Abstract: A traveling wave of BaSO4 in the chlorite-thiourea reaction has shown concentric precipitation patterns upon being triggered by the autocatalyst, HOCl. The precipitation patterns show circular rings of alternate null and full precipitation regions. This self-organization appears to be the result of the formation of a convective torus. Last Updated: Thursday, June 08, 2006 The real heroes behind this work |